miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Oryzias latipes, Gasterosteus aculeatus, Oreochromis niloticus, Fundulus heteroclitus, Sparus aurata, Dicentrarchus labrax, Dissostichus mawsoni, Anoplopoma fimbria, Takifugu rubripes, Sebastes caurinus, Perca flavescens, Paralabidochromis chilotes, Hippoglossus hippoglossus, Poecilia reticulata, Paralichthys olivaceus, Psetta maxima, Lates calcarifer, Sebastes rastrelliger, Solea senegalensis, Thunnus thynnus, Cynoglossus semilaevis



ABOUT THIS RECORD

ID: MNEST009041
species: Sparus aurata
miRNA family: miR-122
source: miRNEST

Taxonomy by NCBI:
Sparus aurata Sparus Sparidae Percoidei Perciformes Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AAACGCCATTATCACACTAAA

miRNA*
GAGTGTGACAATGGTGTTTGT

mismatches: 3
bulges: 0

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pre-miRNA
TCCAGAGCTGTGGAGTGTGACAATGGTGTTTGTGTCCTCCGTATCAAACGCCATTATCACACTAAATAGCTACAG

dot-bracket secondary structure
.....((((((..(((((((.(((((((((((............))))))))))).)))))))..))))))....


SIMILARITIES
miRBase oan-mir-122: 7e-26

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-122: 1e-27
most similar mature miRNAs

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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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