miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Petromyzon marinus



ABOUT THIS RECORD

ID: MNEST025423
species: Petromyzon marinus
miRNA family: mir-9
source: miRBase, original name: pma-mir-9a-2 (MI0017007)

Taxonomy by NCBI:
Petromyzon marinus Petromyzon Petromyzontidae Petromyzontiformes Hyperoartia Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCTTTGGTTATCTAGCTGTATG

miRNA*
TAAAGCTAGATAACCGAAAGTA

mismatches: 3
bulges: 0

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pre-miRNA
TTCTAGTAGGTGGTATCTTTGGTTATCTAGCTGTATGAGTGTGTCTGGCCGTCATAAAGCTAGATAACCGAAAGTACCAACGACTTCCA

dot-bracket secondary structure
....(((...(((((..(((((((((((((((.(((((..((.....))..))))).)))))))))))))))..)))))...)))....


SIMILARITIES
miRBase dre-mir-9-2: 3e-25

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-9: 6e-18

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ, Proc Natl Acad Sci U S A. 107:19379-19383(2010)., "microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate"




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