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Species belonging to selected taxon:
Glycine soja
,
Phaseolus acutifolius
,
Phaseolus coccineus
,
Cajanus cajan
,
Glycine max
,
Vigna unguiculata
,
Phaseolus vulgaris
ABOUT THIS RECORD
ID:
MNEST040474
species:
Glycine max
miRNA family:
MIR396
source:
miRBase, original name:
gma-MIR396b
(
MI0001786
)
Taxonomy by NCBI:
Glycine max
Glycine
Phaseoleae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTCCACAGCTTTCTTGAACTT
miRNA*
GCTCAAGAAAGCTGTGGGAGA
mismatches:
1
bulges:
0
View larger
pre-miRNA
CTCAAGTCCTGGTCATGCTT
TTCCACAGCTTTCTTGAACTT
CTTATGCATCTTATATCTCTCCACCTCCAGGATTTTAAGCCCTAGAA
GCTCAAGAAAGC
TGTGGGAGA
ATATGGCAATTCAGGCT
dot-bracket secondary structure
....((.((((((((((.((
(((((((((((((((((.(((
((...((.......(((.((........))))).....))...))))
).))))))))))
)))))))))
.))))))....))))))
SIMILARITIES
miRBase
gma-MIR396d
:
7e-52
PMRD
gma-miR396b
:
2e-67
microPC
miR396
:
0.000002
UniProt
no hits
RFAM
MIR396: 5e-19
Identical with:
gma-miR396b
from PMRD (
MNEST048579
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
degradome data
download this record
evidence:
454
deep sequencing data evidence
references
[
1
] Dezulian T, Palatnik JF, Huson DH, Weigel D,
http://genomebiology.com/2005/6/11/p13 (2005).
,
"Conservation and divergence of microRNA families in plants"
[
2
] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O,
BMC Genomics. 9:160(2008).
,
"Novel and nodulation-regulated microRNAs in soybean roots"