miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Glycine soja, Phaseolus acutifolius, Phaseolus coccineus, Cajanus cajan, Glycine max, Vigna unguiculata, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST001908
species: Phaseolus acutifolius
miRNA family: MIR159
source: miRNEST

Taxonomy by NCBI:
Phaseolus acutifolius Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTGGATTGAAGGGAGCTCTA

miRNA*
GAGCTCCTTGAAGTCCAATTG

mismatches: 3
bulges: 0

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pre-miRNA
GTGGAGCTCCTTGAAGTCCAATTGAGGATCTTACTGGGTGGATTGAGCTGCTTAGCTATGGATCCCACAGTTCTACCCATCTGCATGTTTTGTGGTAGTC
TTGTGGCTTCCATATCTGGGGAGCTTCATCTGCCTCTATAGTATCATCCTTCTTTGGATTGAAGGGAGCTCTA


dot-bracket secondary structure
..((((((((((..(((((((..((((((..((((((((((((.(((((.(((((.((((((..((((((..(((((((...........)).)))))..
))))))..)))))).))))).))))).))))))))....))))..))))))..)))))))..)))))))))).



SIMILARITIES
miRBase pvu-MIR159a: 7e-93

PMRD pvu-miR159: 7e-93

microPC miR159: 1e-66
UniProt no hits

RFAM MIR159: 1e-20
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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