miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Ciona intestinalis, Ciona savignyi



ABOUT THIS RECORD

ID: MNEST025314
species: Ciona savignyi
miRNA family: let-7
source: miRBase, original name: csa-let-7b (MI0007182)

Taxonomy by NCBI:
Ciona savignyi Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAGGTAGTAGGTTATGTTGTT

miRNA*
GAGATACAACATGACTTACTCATCTCTGC

mismatches: 1
bulges: 7

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pre-miRNA
TAGTAGTCTTGTTGTTGAGGTAGTAGGTTATGTTGTTGCGTGAATTACAACACACAGGAGATACAACATGACTTACTCATCTCTGCAGAAGGGCTACAGC
TA


dot-bracket secondary structure
..((((((((.((((.((((((((((((((((((((((.(((........))).))......))))))))))))))).))))).)))).))))))))...
..



SIMILARITIES
miRBase cin-let-7b: 0.00000002

PMRD no hits

microPC no hits
UniProt no hits

RFAM let-7: 0.0000004

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"




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