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Species belonging to selected taxon:
Ciona intestinalis
,
Ciona savignyi
ABOUT THIS RECORD
ID:
MNEST025333
species:
Ciona savignyi
miRNA family:
mir-216
source:
miRBase, original name:
csa-mir-216a
(
MI0007201
)
Taxonomy by NCBI:
Ciona savignyi
Ciona
Cionidae
Phlebobranchia
Enterogona
Ascidiacea
Tunicata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TAATCTCAGCTGGCAATCTGTGA
miRNA*
ACAGATGCAGATGGGATTCTG
mismatches:
2
bulges:
2
View larger
pre-miRNA
TGTCCCGGCTCATTC
TAATCTCAGCTGGCAATCTGTGA
TTGGCTGAAAATC
ACAGATGCAGATGGGATTCTG
ATGAGTCGGGA
dot-bracket secondary structure
..((((((((((((.
.(((((((.(((.((.(((((((
((.......))))
)))))))))).)))))))..)
)))))))))))
SIMILARITIES
miRBase
cin-mir-216
:
0.000001
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-216: 6e-36
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Fu X, Adamski M, Thompson EM,
Mol Biol Evol. 25:1067-1080(2008).
,
"Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"