miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Mimulus guttatus
,
Mimulus guttatus var. nasutus
,
Mimulus lewisii
ABOUT THIS RECORD
ID:
MNEST001560
species:
Mimulus guttatus
miRNA family:
MIRf402
source:
miRNEST
Taxonomy by NCBI:
Mimulus guttatus
Mimulus
Phrymaceae
Lamiales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CCATGTTATATGATTCTTCAT
miRNA*
AAGGTTTTCACATTGCATGGGA
mismatches:
5
bulges:
1
View larger
pre-miRNA
CATATGACCGAT
AAGGTTTTCACATTGCATGGGA
CGAGTAGAATAAGAAAGATTTTTGCTATCACGAAATAAGAATTTGTTGTTGAAGAATCCATTCTTC
GTAATTTTGCAGAAGCTGCTGTACGAGCAAAGGTACCAGCTTGTCCACTAGGGTTTGCGTCATTATATTTCCTGGACCCTCAACTGCTAATACGGGCAGT
AACGCAAACGGCTGTGTGTAAATCTCAAGAACGAGATTCAACTTCACGTCAACATTCAAGAATTGTTCGGTATCGATAGTCTC
CCATGTTATATGATTCT
TCAT
CGAAGCTGA
dot-bracket secondary structure
........((((
.(((...(((.((.((((((((
.((((............))))..((((((.((((...((..((((.((((((.((.((((......
(((((..((((((..(((.((.((((((..........)))))).)).)))..))))))..)))))......))))...)).((((((......))))))
...((.....)).(((.((.((((((......))))))..))..))).))))))..))))..)).)))).....)))))).))
)))))).)).)))..))
).))
)).......
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record