miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii



ABOUT THIS RECORD

ID: MNEST001560
species: Mimulus guttatus
miRNA family: MIRf402
source: miRNEST

Taxonomy by NCBI:
Mimulus guttatus Mimulus Phrymaceae Lamiales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CCATGTTATATGATTCTTCAT

miRNA*
AAGGTTTTCACATTGCATGGGA

mismatches: 5
bulges: 1

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pre-miRNA
CATATGACCGATAAGGTTTTCACATTGCATGGGACGAGTAGAATAAGAAAGATTTTTGCTATCACGAAATAAGAATTTGTTGTTGAAGAATCCATTCTTC
GTAATTTTGCAGAAGCTGCTGTACGAGCAAAGGTACCAGCTTGTCCACTAGGGTTTGCGTCATTATATTTCCTGGACCCTCAACTGCTAATACGGGCAGT
AACGCAAACGGCTGTGTGTAAATCTCAAGAACGAGATTCAACTTCACGTCAACATTCAAGAATTGTTCGGTATCGATAGTCTCCCATGTTATATGATTCT
TCAT
CGAAGCTGA


dot-bracket secondary structure
........((((.(((...(((.((.((((((((.((((............))))..((((((.((((...((..((((.((((((.((.((((......
(((((..((((((..(((.((.((((((..........)))))).)).)))..))))))..)))))......))))...)).((((((......))))))
...((.....)).(((.((.((((((......))))))..))..))).))))))..))))..)).)))).....)))))).)))))))).)).)))..))
).))
)).......



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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