miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Physcomitrella patens
ABOUT THIS RECORD
ID:
MNEST039588
species:
Physcomitrella patens
source:
miRBase, original name:
ppt-MIR1028a
(
MI0005971
)
Taxonomy by NCBI:
Physcomitrella patens
Physcomitrella
Funariaceae
Funariales
Funariidae
Bryopsida
Moss Superclass V
Bryophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCTTAGATCTACAATGTCACA
miRNA*
TGACATTGTAGATCTACGTGC
mismatches:
3
bulges:
0
View larger
pre-miRNA
ACCCGATTTACCTTCACATCTGTTCCAGC
TCTTAGATCTACAATGTCACA
TGAACACATACTTGGTAACGAATCTGGCAGTAAGACTTCATTTATATGGG
TCCATTCCGCTCCAAGCTTTCACATCTGTGACAGATTTAGCAATATAGTGAAAATCTGACCGTTGGTGATGCAACTGAAGCAAGTTTTCACG
TGACATTG
TAGATCTACGTGC
CGGATTAGTGGTGAAAGCCTCAAGTT
dot-bracket secondary structure
............(((((..(((.(((.((
.(.(((((((((((((((((.
((((.....(((((.(........(((.(((..((((.(((....)))))
))......)))))).((..((((...((.(.(((((((.((......))..))))))).)))...)))).))......).))))).)))).)
))))))))
)))))))).).))
.))).)))..)))))...........
SIMILARITIES
miRBase
ppt-MIR1028a
:
2e-134
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
degradome data
download this record
evidence:
454
deep sequencing data evidence
references
[
1
] Axtell MJ, Snyder JA, Bartel DP,
Plant Cell. 19:1750-1769(2007).
,
"Common functions for diverse small RNAs of land plants"