miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis



ABOUT THIS RECORD

ID: MNEST051337
species: Picea glauca
source: PMRD, original name: pga-miR172

Taxonomy by NCBI:
Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGAATCCTGATGATGCTGCAC

miRNA*
GCTTATGCAAGACGAGGCTTCCAACTTGTCACGTGAAGATCAACCTAGTGACAAGTTCAATGAG

mismatches: 11
bulges: 210

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pre-miRNA
GCTTATGCAAGACGAGGCTTCCAACTTGTCACGTGAAGATCAACCTAGTGACAAGTTCAATGAGTGGTCACTGGGTTTTTTCCCGTAAGTGTTAATCAAA
GCTGGTGCTGTTGCTGAATGCAAAATATTCTTTGTCTGCATTAATGCAGGCTGGAACAAGAAATGAAATCCCCTTTTCTGCAGCCATTCTGGAGAAGGAC
TAGTTGTTGAAGAATATATTTGGGGTGAGAATCCTGATGATGCTGCAC


dot-bracket secondary structure
((....(((.((((((........))))))(((.(((((..(((((((((((...(((...)))..)))))))))))))))).)))..(((((..(((((
((((((.((.((.(.((((((......((((..(((((((....))))))).))))..(((((...........)))))...).))))).).)).)).))
))))).))))..)))))..(..((((....))))..)...))).))..



SIMILARITIES
miRBase sbi-MIR172f: 0.000003

PMRD psi-miR172: 0.00000000005

microPC miR172: 0.0002
UniProt no hits

RFAM mir-172: 0.00006

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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