miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST002016
species: Pinus banksiana
miRNA family: MIR946
source: miRNEST

Taxonomy by NCBI:
Pinus banksiana Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAGACCTTCTCCTATCCACAA

miRNA*
GTGGATATGGAAGGGTTAGTA

mismatches: 3
bulges: 2

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pre-miRNA
GGACCTGCTTTCTTGCCATATGAAGAAATTGATGCGTTCAGAGTGTATGGATGTGGATATGGAAGGGTTAGTAAACGGTACAAAACCCACTTAAAGGATA
TTCCGTTAGAGGCATCATTGTTGGCTGCTCGAGATCAAGCAACTGTGTTCAATTTGATGGCCATACTCACTAAATGGGTTTCCTGTTTTCTCTTCACCAG
TCCTTCTCCTATCCAACTCTGTTCAAGCACCTGCATTTTGACGCCCATGGCTCTTCTCCTATCCAGCTGCACCTGTATTTTGACGGCCTTGTTCATTAAA
TGGGTTGGCTGTTTGCTCTTAACTAGACCTTCTCCTATCCACAATTGTACTAGTTTGTTCACACCAATTTCTTCGACGGCAATCTGGAGCGGC


dot-bracket secondary structure
....(((((((.(((((...(((((((((((.((....((((..((((((.((((((((.(((((((((((((((((((....((((((.((((.(((((
..(((((((((((.(((.(((.((.((((.(((...(((..((((((........(((((....(((((.....)))))...))))).......)).)))
).)))................))).)))))).)))...))).)))...((((............))))((....))..))))))))...))))).)))).
)))))).))))))))))........)))))).))))))))))).))))))...))))....)).)))))))))))..)))))...))))))).



SIMILARITIES
miRBase pta-MIR946b: 1e-25

PMRD pta-miR946b: 1e-25

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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