miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Pinus banksiana, Pinus banksiana, Pinus contorta, Pinus contorta, Pinus pinaster, Pinus pinaster, Pinus taeda, Pinus taeda



ABOUT THIS RECORD

ID: MNEST002021
species: Pinus banksiana
miRNA family: MIR482
source: miRNEST

Taxonomy by NCBI:
Pinus banksiana Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCTTCCCTACTCCTCCCATTCC

miRNA*
TGTGGAAGGATAGGGTAAGACT

mismatches: 2
bulges: 2

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pre-miRNA
GAAGGCGGATGGTTGCGAGAAAGGGAGGTGTTATGGTTAGAAGTCTTGAGGTGTGGAAGGATAGGGTAAGACTAAGGTTAAGGAGAAACTCTACTTCATT
AATTCTCTGCTCCAGTCTTCCCTACTCCTCCCATTCCTTTTGCCTTCACCACACTTCCCTTTCCAACGCAACACAGCAATATAGT


dot-bracket secondary structure
....((.....((((((.(((((((((((((...(((..((((....((((.((((.(((((((((.((((((..((....((((((.............
..))))))...))))))))))))).)))).)))).))))....))))))))))))))))))))...))))))...))........



SIMILARITIES
miRBase pta-MIR482a: 2e-44

PMRD pta-miR482a: 2e-44

microPC miR482: 9e-40
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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