miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Pinus banksiana, Pinus banksiana, Pinus contorta, Pinus contorta, Pinus pinaster, Pinus pinaster, Pinus taeda, Pinus taeda



ABOUT THIS RECORD

ID: MNEST051552
species: Pinus taeda
miRNA family: MIR156
source: PMRD, original name: pta-miR156b

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CAGAAGATAGAGAGCACAAC

miRNA*
TGTGCTCTCGTTGATTTTGTC

mismatches: 6
bulges: 1

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pre-miRNA
GATGACAGAAGATAGAGAGCACAACCGCTCAGATGCCGGCACTCTGCGTTTGAGGTGTATGTGCTCTCGTTGATTTTGTCATC

dot-bracket secondary structure
((((((((((....(((((((((..(((((((((((.(.....).)))))))).)))..))))))))).....))))))))))


SIMILARITIES
miRBase pta-MIR156b: 6e-42

PMRD pta-miR156a: 3e-25

microPC miR157: 7e-23
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"




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