miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Schistosoma mansoni, Schistosoma japonicum, Taenia solium, Schmidtea mediterranea



ABOUT THIS RECORD

ID: MNEST038962
species: Schistosoma japonicum
source: miRBase, original name: sja-mir-2d (MI0015302)

Taxonomy by NCBI:
Schistosoma japonicum Schistosoma Schistosomatidae Schistosomatoidea Strigeidida Digenea Trematoda Platyhelminthes Acoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GTCATCCATGGATTGTGATTTT

miRNA*
TATCACAGTCCTGCTTAGGTGACGA

mismatches: 1
bulges: 5

View larger
pre-miRNA
CGACCAGTTCGTCATCCATGGATTGTGATTTTCGGACTCCATGTTTCATTAAGTGAATATCACAGTCCTGCTTAGGTGACGAATTTCGT

dot-bracket secondary structure
(((..(((((((((((((.((((((((((.(((..(((..(((...)))..)))))).))))))))))))....)))))))))))))).


SIMILARITIES
miRBase sja-mir-2d: 2e-45

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W, PLoS Negl Trop Dis. 4:e596(2010)., "An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum"




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