ABOUT THIS RECORDspecies: Brachypodium distachyon
source: miRBase, original name: bdi-MIR5164 (MI0018131)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGCAACTTTGTCTAGATACGC miRNA* GTATCTAGACAAAATTGTGAC mismatches: 1 bulges: 0 |
pre-miRNA
GTATTAAAAACTATGCTCTTGGGATAACTAGTACTCCCTCCGTCCCATAGTTAGTATCGCAACTTTGTCTAGATACGCATGTACCTACACACTAAAAAGC
GTCTGGATACATGCGTATCTAGACAAAATTGTGACACTTAATATGGGACGGGGAGGGAGTAACAAA
dot-bracket secondary structure
((((........))))...(((.....))).((((((((((((((((((...(((.((((((.((((((((((((((((((((.(((.((.((....)).
)).))).)))))))))))))))))))).)))))).)))...))))))))..)))))))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
GTATTAAAAACTATGCTCTTGGGATAACTAGTACTCCCTCCGTCCCATAGTTAGTATCGCAACTTTGTCTAGATACGCATGTACCTACACACTAAAAAGC
GTCTGGATACATGCGTATCTAGACAAAATTGTGACACTTAATATGGGACGGGGAGGGAGTAACAAA
dot-bracket secondary structure
((((........))))...(((.....))).((((((((((((((((((...(((.((((((.((((((((((((((((((((.(((.((.((....)).
)).))).)))))))))))))))))))).)))))).)))...))))))))..)))))))))).....
SIMILARITIES| miRBase osa-MIR818d: 0.000002 PMRD osa-miR818d: 0.000002 microPC no hits | UniProt no hits RFAM MIR1122: 0.0000000006 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
