miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST048335
species: Brachypodium distachyon
source: PMRD, original name: bdi-miR2509

Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GAATGACGCCGGGTCTGAAAG

miRNA*
TTCGGACCAGGCTTCATTCCC

mismatches: 2
bulges: 0

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pre-miRNA
TCATGGTTGTCGAGGGGAATGACGCCGGGTCTGAAAGAAAGAAGGGGGCACGCCGGGAATGACAGCGGTTCCCTAGCTCTTTCGGACCAGGCTTCATTCC
C
CATGACTCGACCATGG


dot-bracket secondary structure
.(((((((((((.(((((((((.(((.(((((((((((....(((((((.(((.(.......).))))))))))...))))))))))).))).)))))))
)
).))))..))))))).



SIMILARITIES
miRBase bdi-MIR166a: 5e-62

PMRD bdi-miR166: 5e-62

microPC miR166: 0.000006
UniProt no hits

RFAM mir-166: 0.0000001

Identical with: bdi-miR166 from PMRD (MNEST048307)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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