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Species belonging to selected taxon:
Agrostis stolonifera
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Cynodon dactylon
,
Eragrostis curvula
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Panicum virgatum
,
Pseudoroegneria spicata
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Cenchrus ciliaris
,
Brachypodium distachyon
,
Zea mays
,
Triticum aestivum
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST048335
species:
Brachypodium distachyon
source:
PMRD, original name:
bdi-miR2509
Taxonomy by NCBI:
Brachypodium distachyon
Brachypodium
Brachypodieae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GAATGACGCCGGGTCTGAAAG
miRNA*
TTCGGACCAGGCTTCATTCCC
mismatches:
2
bulges:
0
View larger
pre-miRNA
TCATGGTTGTCGAGGG
GAATGACGCCGGGTCTGAAAG
AAAGAAGGGGGCACGCCGGGAATGACAGCGGTTCCCTAGCTCT
TTCGGACCAGGCTTCATTCC
C
CATGACTCGACCATGG
dot-bracket secondary structure
.(((((((((((.(((
((((((.(((.((((((((((
(....(((((((.(((.(.......).))))))))))...)))
)))))))).))).)))))))
)
).))))..))))))).
SIMILARITIES
miRBase
bdi-MIR166a
:
5e-62
PMRD
bdi-miR166
:
5e-62
microPC
miR166
:
0.000006
UniProt
no hits
RFAM
mir-166: 0.0000001
Identical with:
bdi-miR166
from PMRD (
MNEST048307
)
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
download this record