ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR1436
source: miRBase, original name: hvu-MIR1436 (MI0016743)
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACATTATGGGACGGAGGGAGT miRNA* TCCCTCCATAATGTAG mismatches: 0 bulges: 5 |
pre-miRNA
GGCTTCCCTGTATACAGACAGAGTCATACTCCCTCCATAATGTAGTACGGTTTTTGACACTACTACATTATGGGACGGAGGGAGTACATTG
dot-bracket secondary structure
(((((..(((....)))...))))).(((((((((((((((((((((..(((...)))..))))))))))).....)))))))))).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Kantar M, Unver T, Budak H, Funct Integr Genomics. 10:493-507(2010)., "Regulation of barley miRNAs upon dehydration stress correlated with target gene expression"
GGCTTCCCTGTATACAGACAGAGTCATACTCCCTCCATAATGTAGTACGGTTTTTGACACTACTACATTATGGGACGGAGGGAGTACATTG
dot-bracket secondary structure
(((((..(((....)))...))))).(((((((((((((((((((((..(((...)))..))))))))))).....)))))))))).....
SIMILARITIES| miRBase osa-MIR1436: 0.00002 PMRD osa-miRf10406-akr: 0.000004 microPC miR1436: 0.000004 | UniProt no hits RFAM MIR1122: 0.000005 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Kantar M, Unver T, Budak H, Funct Integr Genomics. 10:493-507(2010)., "Regulation of barley miRNAs upon dehydration stress correlated with target gene expression"
