miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor

ABOUT THIS RECORD

ID: MNEST003886
species: Oryza sativa
miRNA family: MIR1846
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
CAACGAGGAGGCCGGGACCGT

miRNA*
TGACCCGGCCTCCTCGTCGGC

mismatches: 4
bulges: 0

View larger

pre-miRNA
GATGCATCCGCCAACGAGGAGGCCGGGACCGTCGGATCCGGCTGACCCGGCCTCCTCGTCGGCGGAGGGGA

dot-bracket secondary structure
......((((((.((((((((((((((...((((....))))...)))))))))))))).)))))).....

UniProt no hits

RFAM MIR1846: 1e-24

most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record