ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR160
source: miRBase, original name: osa-MIR160d (MI0000666)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCGTGCGAGGAGCCAAGCATG mismatches: 2 bulges: 0 |
pre-miRNA
GGGGATATGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAAACTCAGTTGAAACAACTGCCTTCTCCCGGCGAGATTCAGGCATTGTGTTCGTACGT
TTGGCTCTACTGCGGATGGCGTGCGAGGAGCCAAGCATGACC
dot-bracket secondary structure
..((.(((((.(((((((.(((((((((..(((((((..(((((((.....((((((((.(((((((((.....))))...))))))))).))))...))
))))).)))).)))..))))))))).))))))).))))).))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
GGGGATATGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAAACTCAGTTGAAACAACTGCCTTCTCCCGGCGAGATTCAGGCATTGTGTTCGTACGT
TTGGCTCTACTGCGGATGGCGTGCGAGGAGCCAAGCATGACC
dot-bracket secondary structure
..((.(((((.(((((((.(((((((((..(((((((..(((((((.....((((((((.(((((((((.....))))...))))))))).))))...))
))))).)))).)))..))))))))).))))))).))))).))
SIMILARITIES| miRBase tae-MIR160: 8e-18 PMRD osa-miR160d: 7e-77 microPC miR160: 1e-69 | UniProt no hits RFAM mir-160: 5e-72 |
Identical with: osa-miR160n from PMRD (MNEST048833) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
