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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST004346
species: Oryza sativa
miRNA family: MIR530
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCATTTGCACCTGCACCTAC

miRNA*
 AGGTGCCAAGGCAGATGCAAC

mismatches: 5
bulges: 0
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pre-miRNA
 ATATATATAGCAAAGTGATGTGTGATAGAGCTGCATTTGCACCTGCACCTACAGAGAGGGAGATGGAGCAGCAAGCTAGCAATACGTGCTTGATCGCTAT
ACGCTAGCTTCTTGCACCCATGTTGGTCCCTGGCCCCTTCCTGATCCCTAGGTGCCAAGGCAGATGCAACTGTGTCCAAAACTTTCCCATCCATCTTT

dot-bracket secondary structure
...........(((((....((.((((.((.(((((((((....(((((((..((..(((((((((.((((.((((((((.......((......))...
..)))))))).))))..))))...((((...))))..)))))..))..)))))))....))))))))).)).))))))..))))).............


SIMILARITIES
miRBase osa-MIR530: 5e-54

PMRD osa-miRf10677-akr: 7e-53

microPC miR530: 9e-74		UniProt no hits

RFAM MIR530: 0.00000001		most similar mature miRNAs

Identical with: miR530 from microPC (MNEST046704)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence




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