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Species belonging to selected taxon:
Agrostis stolonifera
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Cynodon dactylon
,
Eragrostis curvula
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Panicum virgatum
,
Pseudoroegneria spicata
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Cenchrus ciliaris
,
Brachypodium distachyon
,
Zea mays
,
Triticum aestivum
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST001838
species:
Panicum virgatum
miRNA family:
MIR444
source:
miRNEST
Taxonomy by NCBI:
Panicum virgatum
Panicum
Paniceae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGTGGCTTTCATGCAAGTTG
miRNA*
ACTTGCAAGAAAGTCACAAAA
mismatches:
2
bulges:
0
View larger
pre-miRNA
GGTGGCACCAAGCATGAGGCAGGAACTGCATT
ACTTGCAAGAAAGTCACAAAA
TCCATTGCAAGATCATAC
TTGTGGCTTTCATGCAAGTTG
TGCAGTTG
TTGCCTCAAGCTTGCTGCCTC
dot-bracket secondary structure
...((((.(((((.((((((((.((((((((.
(((((((.(((((((((((..
...(((....))).....
))))))))))).))))))).)
))))))).
)))))))).))))).))))..
SIMILARITIES
miRBase
ssp-MIR444b
:
3e-48
PMRD
osa-miR444f
:
4e-16
microPC
miR444
:
6e-40
UniProt
no hits
RFAM
MIR444: 2e-46
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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