miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST002441
species: Saccharum hybrid cultivar CoS 767
miRNA family: MIRf34
source: miRNEST

Taxonomy by NCBI:
Saccharum hybrid cultivar CoS 767 Saccharum hybrid cultivar Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AAAGGGACGGAGGGAGTACGC

miRNA*
ATACTCCTCTGTCCCTTAAC

mismatches: 4
bulges: 1

View larger
pre-miRNA
TACTAGTTGTGTTCGATTCTTTTGGGACAATAGCAAGCATACCTTTTTCTCGTCGTTGTTATATACTCCTCTGTCCCTTAACATGTGTCTGTAGAAAACC
ATGTTTCCCTCACAAACACGCTTCTCGGGCGACACTTAAAAGGGGCGACACTTAAAAGGGACGGAGGGAGTACGCAACCTGTTTGTACAAACAGGTACAT
ATTTAGATGTTCTATATAGTGGCTGATATGCCGA


dot-bracket secondary structure
.....(((((.(((((.....)))))...))))).((((.((.........))...))))...((((((((((((((((.....(((((.((...((((.
..))))((((........((((.....)))).........)))))))))))....)))))))))).))))))....((((((((....))))))))...(
((.((((...)))).))).((((......)))).



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record





Liczniki na strone;