miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042625
species: Sorghum bicolor
miRNA family: MIR821
source: miRBase, original name: sbi-MIR821a (MI0010925)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AAGTCATCAACATAAAAGTTG

miRNA*
ACTTGTATATTCATAACTTTA

mismatches: 4
bulges: 0

View larger
pre-miRNA
TAAATGATTTCAGCTAAAAAAGTCATCAACATAAAAGTTGTAAAACTGGTCAAGATCTCCAATTTTTATTTTAGTCATTTTTTCATATGACAAAGTAATA
GTAACATTGTTCATAAATTTTACATATCTCTGATATAGTTTCATAAACTATATGAGAGATATGTAAAATTTATGAACAATGTTACTATTACTTTGTCGGA
TGAATAAATAACCAAAATAAAAGTTGTAGATCTTGATGAGTTGTACAACTTGTATATTCATAACTTTATCAACTAAAATCATTTA


dot-bracket secondary structure
((((((((((.((.....(((((.((.((.(((.((((((((.((((.((((((((((.(((((((((((((.((.((((.(((((.(((((((((((((
(((((((((((((((((((((((((((((((.((((((((.....)))))))).)))))))))))))))))))))))))))))))))))))))))))).)
)))).)))).)).))))))))))))).)))))))))).)))).)))))))).))).)).)).))))).....)).))))))))))



SIMILARITIES
miRBase sbi-MIR821c: 8e-103

PMRD sbi-miR821a: 3e-124

microPC no hits
UniProt no hits

RFAM MIR821: 1e-95

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"




Liczniki na strone;