miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST004168
species: Oryza sativa
miRNA family: MIR1428
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AATTCACAGGCCCTATCTTGTG

miRNA*
 TAAGATAATGCCATGAATTTG

mismatches: 3
bulges: 1
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pre-miRNA
 AATAGGTTAGTGCGCTTGGCGAATTCACAGGCCCTATCTTGTGGTATGAACTGGGTACGCGATGATTTGCACTGCGTATTGGGGGCTTACCATAAGATAA
TGCCATGAATTTGTCAAGCGTTCAAACCCAC

dot-bracket secondary structure
....((((...((((((((((((((((..(((..((((((((((((....((.((((((((.((.....)).)))))))).))....)))))))))))).
.))).))))))))))))))))...))))...


SIMILARITIES
miRBase osa-MIR1428e: 8e-58

PMRD osa-miR1428d: 9e-33

microPC miR1428: 1e-19		UniProt no hits

RFAM MIR1428: 6e-65		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence




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