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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST001692
species: Panicum virgatum
miRNA family: MIRf10
source: miRNEST

Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATTCGTCTCGCGATTTACATA

miRNA*
 TGTAAATGGCGAGACGAATCT

mismatches: 2
bulges: 0
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pre-miRNA
 TGCATGGAGATTTAAATCTAGACGAAATAAAAAACGCATTGCAACTGCTGTCTGTAAATGGCGAGACGAATCTAATGAACCTAATTAGGCTGTAATCAGA
CGCTAAATTGCTACAGTAATGCTACAGTAAACAACCTCTAATGACGGATTAATTAGGCTCATTAGATTCGTCTCGCGATTTACATACAAGTTCTGTAATT
ATTTTTGTGATTAGTTTATATTTAGTACTTCAAAT

dot-bracket secondary structure
....(((((..((((((.(((((...(((((((....(((((((((..(((.(((((((.((((((((((((((((((.(((((((((.((((.((.(((
.......(((((..(((...)))..)))))......))).)).)))).))))))))).)))))))))))))))))).))))))).))))))..)))))).
.))))))).....))))).))))))..)))))...


SIMILARITIES
miRBase osa-MIR442: 0.00000000005

PMRD osa-miRf10806-akr: 0.00000000005

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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