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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST054643
species: Saccharum officinarum
source: PMRD, original name: sof-miR319b

Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGGATTGAAGGGAGCTCCT

miRNA*
 GAGCTCCCTTCGATCCAATC

mismatches: 2
bulges: 0
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pre-miRNA
 AAGAGCTCCCTTCGATCCAATCCAGGAGGGGAAGTGGTCGGTTGCAGCTGCCGGTTCATGGATGCCTCTCTGGTGCAGCAATGACTAATGCTCACCTGCA
CTTGCATGGGTGTGCATGACCCGGGAGATGAACCCACCATCATCTTTCCCTCGTGCTTGGATTGAAGGGAGCTCCT

dot-bracket secondary structure
..((((((((((((((((((..((.(((((((((((((.((((.((.((.((((.(((((.((((((....(((((((...((((....).))).)))))
)).....)))))).))))).)))).)).)))))).))))....))))))))).)).))))))))))))))))))..


SIMILARITIES
miRBase sof-MIR159c: 4e-97

PMRD sof-miR159c: 4e-97

microPC miR319: 4e-97		UniProt no hits

RFAM MIR159: 2e-93

Identical with: miR319 from microPC (MNEST046130)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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