miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042520
species: Sorghum bicolor
miRNA family: MIR167
source: miRBase, original name: sbi-MIR167b (MI0001514)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAAGCTGCCAGCATGATCTA

miRNA*
GATCATGCTGTGACAGTTTCA

mismatches: 1
bulges: 2

View larger
pre-miRNA
TGAAGCTGCCAGCATGATCTAACAACGGCATTGCTCCTCCGTGTAGCGCCCTGTGCTTGCTTTTGCTTGTCTCCATGGAGAAGACAGCGGCAAAGCTTAG
CTTTGCTTCGCTTAGCTTGCTGGCTTTTCGTATGGGCTGGCGGCGGGTTGCTGCGTGAAGCTTGCAAGTGATGGTTAGATCATGCTGTGACAGTTTCA


dot-bracket secondary structure
.((((((((((((((((((((((....((.((((..((.(((((((((.((((((((.(((..(((...((((....))))...(((((((.((((..((
(...)))..)))).)).))))).......)))..))).))).))))).))))))))).))...))))))....)))))))))))))).).))))))).



SIMILARITIES
miRBase zma-MIR167b: 0.0000000000002

PMRD sbi-miR167b: 4e-110

microPC miR167: 0.00004
UniProt no hits

RFAM MIR167_1: 7e-109

Identical with: sbi-miR167b from PMRD (MNEST054428)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Maher C, Timmermans M, Stein L, Ware D, Proc IEEE CSB :718-723(2004)., "Identifying microRNAs in plant genomes"
[2] Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA, PLoS Biol. 3:e13(2005)., "Sorghum genome sequencing by methylation filtration"




Liczniki na strone;