ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR437
source: PMRD, original name: sbi-miR437u
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAAGTTAGAGAAGTTTGACTT miRNA* mismatches: 4 bulges: 2 |
pre-miRNA
TTAAACCTCTAACTGTGACTGATTTTTTTGGAAAAATATATTAACATCTGCAAGCTGAAATAAGTGCACTATCAAGACATGGAGAATTTAATGAAACTAA
TTTGATGTCATAGATATTGGCGTATTTTTCTATAAACTTGGTGAAAGTTAGAGAAGTTTGACTT
dot-bracket secondary structure
((((((((((((((.(.((..(.(((..((((((((((..((((.(((((...(((......)))..........(((((...(((((..........))
))).))))).))))).))))..)))))))))).))).)..)).).))))))))..))))))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
TTAAACCTCTAACTGTGACTGATTTTTTTGGAAAAATATATTAACATCTGCAAGCTGAAATAAGTGCACTATCAAGACATGGAGAATTTAATGAAACTAA
TTTGATGTCATAGATATTGGCGTATTTTTCTATAAACTTGGTGAAAGTTAGAGAAGTTTGACTT
dot-bracket secondary structure
((((((((((((((.(.((..(.(((..((((((((((..((((.(((((...(((......)))..........(((((...(((((..........))
))).))))).))))).))))..)))))))))).))).)..)).).))))))))..))))))...
SIMILARITIES| miRBase sbi-MIR437u: 2e-77 PMRD sof-miR437: 1e-17 microPC miR437: 1e-17 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
