miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST046150
species: Triticum turgidum subsp. durum
source: microPC, original name: miR1130

Taxonomy by NCBI:
Triticum turgidum subsp. durum Triticum turgidum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCTCCGTCCCATAATGTAAGAC

miRNA*
 CTTACGTTATGGGACAGAGG

mismatches: 1
bulges: 0
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pre-miRNA
 CCTCCGTCCCATAATGTAAGACATTTTTTGACATTACACTAGAGTCAAAAAACGTCTTACGTTATGGGACAGAGG

dot-bracket secondary structure
((((.(((((((((((((((((.(((((((((...........))))))))).))))))))))))))))).))))


SIMILARITIES
miRBase tae-MIR1130: 0.000003

PMRD tae-miR1130: 0.000003

microPC miR1436: 7e-23		UniProt no hits

RFAM MIR1122: 2e-17

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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