miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Lolium perenne



ABOUT THIS RECORD

ID: MNEST001414
species: Lolium perenne
miRNA family: MIR172
source: miRNEST

Taxonomy by NCBI:
Lolium perenne Lolium Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAATCCTGATGGTGCTGCTG

miRNA*
GCATTATATTTCAGGTTTAAT

mismatches: 4
bulges: 2

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pre-miRNA
AGAAGGTGGAATCCCCTAGAGTGAATCCTGATGGTGCTGCTGTACAGGGATCATCAAAAGTAGCTGAAAAACATGTAAACGGAGTCAACGCTAGCTCAGC
AGCTGTTGCTTTGGAGACACCTGATGAAGAAACAATTTCTACGAAAGTTGGTTCTCTTACAATCAGTGGCAAGGCAAGGAAGGCTGACGATGAGAGTCGC
TTGGTTGATGTTGTGACCATTGGCTCGTTGCCAATCCGTGTCAGCAAATCTGTTGAGTAGTAGGCAGTTTTCCTTTTGGGTTGGTAGTCTCTTTCTGGTC
CGGCTTTAAGCATTATATTTCAGGTTTAATGGGGTGATGAATAGAAGA


dot-bracket secondary structure
.....((...((((((((...((((.(((((..(((.((((......((((((...((((..((((...(((...((((.((((..((((((.(((((((
((...(((((.((((..(((.((((.(((((((..((((...))))....))).))))...)))))))....(((((.((..(((((((((....)))).
.((((((......))))))))))))).)))))..))))....)))))..)))))))))....))).))))))).)))).)))..))))..)))).)))))
).......)))).)))...))))))))).))))).)))..))......



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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