miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST000645
species: Festuca arundinacea
miRNA family: MIRf1434
source: miRNEST

Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTGCAGGCCGACAGCTGGAA

miRNA*
TCAGCTGAAAGCCTGAAATT

mismatches: 3
bulges: 1

View larger
pre-miRNA
ACCGGCAAATTTTCAGCTGAAAGCCTGAAATTGATGCATCGCACAAGGCATTTCACAACTGGACATGTTTCTGATCACACAAAAACACGTCTCTGAACTT
CTGAAGTCTGAACAACTCAAAGCCTTTTACGGGAGTCCTATCTGGCTAAGCTTATCCAGTAACCTAACAATGATGATCCATTTGCAGGCCGACAGCTGGA
A
GCTGGGTTC


dot-bracket secondary structure
.(((((....(((((((((...(((((((((.(((.(((((....(((.((((((.((..((((.(((((.((......)).))))).))))......))
.)))))).(((.....))).((((......(((...)))....))))..(((.....)))..))).....)))))))).)))).)))))...))))))))
)
)))))....



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record





Liczniki na strone;