ABOUT THIS RECORDspecies: Leymus cinereus x Leymus triticoides
miRNA family: MIR1122
source: miRNEST
Taxonomy by NCBI:
Leymus cinereus x Leymus triticoides Leymus Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCCCTCCGTCCCAAATTA miRNA* ATTCGGGACGGATGGAGTACA mismatches: 2 bulges: 0 |
pre-miRNA
TACATTTTTCTCGTGTTATCTACTCCCTCCGTCCCAAATTACTTGTCGCAGAAATAGACATCTATTGCGACAAGTAATTCGGGACGGATGGAGTACAATG
CTGTTTTCACTTCA
dot-bracket secondary structure
............(((((...((((((.((((((((.((((((((((((((...((((....)))))))))))))))))).)))))))).)))))).))))
).............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TACATTTTTCTCGTGTTATCTACTCCCTCCGTCCCAAATTACTTGTCGCAGAAATAGACATCTATTGCGACAAGTAATTCGGGACGGATGGAGTACAATG
CTGTTTTCACTTCA
dot-bracket secondary structure
............(((((...((((((.((((((((.((((((((((((((...((((....)))))))))))))))))).)))))))).)))))).))))
).............
SIMILARITIES| miRBase tae-MIR1135: 0.00000002 PMRD tae-miR1135: 0.00000002 microPC miR1439: 0.00000002 | UniProt no hits RFAM MIR1122: 0.0000004 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
