miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Populus deltoides
,
Populus euphratica
,
Populus nigra
,
Populus tremula
,
Populus tremula x Populus alba
,
Populus tremula x Populus tremuloides
,
Populus tremuloides
,
Populus trichocarpa x Populus nigra
,
Populus x canadensis
,
Populus trichocarpa
,
Populus trichocarpa x Populus deltoides
ABOUT THIS RECORD
ID:
MNEST045050
species:
Populus deltoides
miRNA family:
MIR166
source:
microPC, original name:
miR166
Taxonomy by NCBI:
Populus deltoides
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCCC
miRNA*
GGAATGCTGGCTGGCTCGAAG
mismatches:
5
bulges:
0
View larger
pre-miRNA
GG
GGAATGCTGGCTGGCTCGAAG
CTTAAGCAAAGAGTATCCTAACATGAAACAACTGTTAAGGCT
TCGGACCAGGCTTCATTCCCC
dot-bracket secondary structure
((
((((((..(.((((..(((((
(((.((((....((.((.......)).))...)))).)))))
)))..)))).)..))))))))
SIMILARITIES
miRBase
ptc-MIR166f
:
6e-39
PMRD
ptc-miR166f
:
6e-39
microPC
miR166
:
1e-43
UniProt
no hits
RFAM
mir-166: 4e-28
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
download this record