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Species belonging to selected taxon:
Populus deltoides
,
Populus euphratica
,
Populus nigra
,
Populus tremula
,
Populus tremula x Populus alba
,
Populus tremula x Populus tremuloides
,
Populus tremuloides
,
Populus trichocarpa x Populus nigra
,
Populus x canadensis
,
Populus trichocarpa
,
Populus trichocarpa x Populus deltoides
ABOUT THIS RECORD
ID:
MNEST045566
species:
Populus tremula x Populus tremuloides
miRNA family:
MIR397
source:
microPC, original name:
miR397
Taxonomy by NCBI:
Populus tremula x Populus tremuloides
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCATTGAGTGCAGCGTTGATG
miRNA*
CCAGCGCTGCATTCAATCA
mismatches:
3
bulges:
0
View larger
pre-miRNA
TCATTGAGTGCAGCGTTGATG
AAATCCTACATTTTGTGCTCTTAAACTGTTACCAACCCTTTATCCATGGCATCATTTCA
CCAGCGCTGCATTCAATCA
dot-bracket secondary structure
..((((((((((((((((.((
((((...(((.((((......)))).)))..(((............)))....))))))
.))))))))))))))))..
SIMILARITIES
miRBase
ptc-MIR397a
:
1e-37
PMRD
ptc-miR397a
:
1e-37
microPC
miR397
:
1e-49
UniProt
no hits
RFAM
MIR397: 5e-34
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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