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Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST041291
species: Populus trichocarpa
miRNA family: MIR156
source: miRBase, original name: ptc-MIR156d (MI0002187)

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGTGAGCAC

miRNA*
GCCCACCCTCTATCTGTCACC

mismatches: 2
bulges: 1

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pre-miRNA
GTAAGTGAGTTGACAGAAGAGAGTGAGCACACAGGGTACTTTCTTGCATGACGTTCATGCTTGAAGCTTTGCGTGCCCACCCTCTATCTGTCACCCCATC
A


dot-bracket secondary structure
....(((.(.(((((((((((.(((.((((.((((((...(((..(((((.....)))))..))))))))).)))).))).)))).))))))).).))).
.



SIMILARITIES
miRBase ptc-MIR156b: 4e-34

PMRD ptc-miRf10647-akr: 1e-52

microPC miR156: 0.000000005
UniProt no hits

RFAM mir-156: 3e-29

Identical with: ptc-miRf10647-akr from PMRD (MNEST052469)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
[3] Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis"




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