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Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST041359
species: Populus trichocarpa
miRNA family: MIR169
source: miRBase, original name: ptc-MIR169e (MI0002255)

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CAGCCAAGGATGACTTGCCGG

miRNA*
GGCAAGCTGTCCTTGGCTATG

mismatches: 4
bulges: 0

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pre-miRNA
TATCGTGGCGCAGCCAAGGATGACTTGCCGGCAAGCTCCTCACACGTATTTTGTTTCGAGTTTCATTGATGGCATTGCTAGATAGATATATATGATTTCG
TAATTCAAACTTTTGGGCCATTGTCTGGTTGAAATGATCGGCAAGCTGTCCTTGGCTATGTCTCTA


dot-bracket secondary structure
....(.((((.((((((((((..(((((((...(((((...(((.......)))...)))))(((((.....((..(((((((((.....((((....))
))..((((....))))....))))))))))).))))).)))))))..)))))))))).)))).)..



SIMILARITIES
miRBase vvi-MIR169w: 0.0000001

PMRD ptc-miR169e: 4e-91

microPC miR169: 0.000008
UniProt no hits

RFAM MIR169_2: 7e-90

Identical with: ptc-miR169e from PMRD (MNEST051662)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
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references

[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




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