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Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST002237
species: Populus x canadensis
miRNA family: MIRf874
source: miRNEST

Taxonomy by NCBI:
Populus x canadensis Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGTCAATGTTCCAGTGATG

miRNA*
TCACTTGAATGTTGACCGAAT

mismatches: 1
bulges: 0

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pre-miRNA
TTTTTGAGTTTATCACTTGAATGTTGACCGAATATGGATGAAAAGTTGTTTTCCGTTTCCTTTCCTCCACATTCGGTCAATGTTCCAGTGATGAGCATAA
AT


dot-bracket secondary structure
..((((.((((((((((.(((((((((((((((.((((.((((.................)))).)))).))))))))))))))).)))))))))).)))
).



SIMILARITIES
miRBase ptc-MIR1444a: 5e-43

PMRD ptc-miRf10525-akr: 2e-45

microPC miR1444: 3e-32
UniProt no hits

RFAM MIR1444: 1e-40
most similar mature miRNAs

Identical with: miR1444 from microPC (MNEST045069)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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