miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Caenorhabditis elegans, Ancylostoma caninum, Ascaris suum, Heterorhabditis bacteriophora, Brachionus plicatilis, Pristionchus pacificus, Caenorhabditis japonica, Caenorhabditis brenneri, Strongyloides ratti, Brugia malayi, Trichinella spiralis, Meloidogyne hapla, Heterodera glycines, Meloidogyne incognita, Caenorhabditis remanei, Trichinella pseudospiralis, Onchocerca volvulus, Nippostrongylus brasiliensis, Meloidogyne chitwoodi, Globodera rostochiensis, Strongyloides stercoralis, Ancylostoma ceylanicum



ABOUT THIS RECORD

ID: MNEST009127
species: Heterorhabditis bacteriophora
miRNA family: miR-3064
source: miRNEST

Taxonomy by NCBI:
Heterorhabditis bacteriophora Heterorhabditis Heterorhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCTGGCTGTTGTGGTGTGCAA

miRNA*
GCCACACTGCAACACCTTACA

mismatches: 3
bulges: 2

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pre-miRNA
TGTCTAACTTTTTATTTTTGGTCTGGCTGTTGTGGTGTGCAAAACTCCGTACATTACTATTTTGCCACACTGCAACACCTTACAGATGTGGAAGATGTGA
AA


dot-bracket secondary structure
..((....(((((((.((((....((.(((((((((((((((((....(((...)))..))))).))))))))))))))...)))).)))))))....))
..



SIMILARITIES
miRBase hsa-mir-3064: 5e-40

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





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