miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Caenorhabditis elegans, Ancylostoma caninum, Ascaris suum, Heterorhabditis bacteriophora, Brachionus plicatilis, Pristionchus pacificus, Caenorhabditis japonica, Caenorhabditis brenneri, Strongyloides ratti, Brugia malayi, Trichinella spiralis, Meloidogyne hapla, Heterodera glycines, Meloidogyne incognita, Caenorhabditis remanei, Trichinella pseudospiralis, Onchocerca volvulus, Nippostrongylus brasiliensis, Meloidogyne chitwoodi, Globodera rostochiensis, Strongyloides stercoralis, Ancylostoma ceylanicum



ABOUT THIS RECORD

ID: MNEST038667
species: Pristionchus pacificus
miRNA family: mir-2238
source: miRBase, original name: ppc-mir-2238e (MI0011223)

Taxonomy by NCBI:
Pristionchus pacificus Pristionchus Neodiplogasteridae Diplogasterida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AATGACAGAACAGTGCGCGAG

miRNA*
CGTTCACTCTTCTCGTCAGTCG

mismatches: 5
bulges: 1

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pre-miRNA
GGTACCTAGTCTTTTCTCTTTCCCGTTCACTCTTCTCGTCAGTCGATGATCGAATATAGAATGACAGAACAGTGCGCGAGAAGGAAGACTAGCTTCC

dot-bracket secondary structure
((...(((((((....((((((.(((.((((.((((.((((.(((.....)))........)))))))).)))).))).)))))))))))))...))


SIMILARITIES
miRBase ppc-mir-2238a-3: 4e-34

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-2238: 6e-49

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"




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