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Species belonging to selected taxon:

Oreochromis niloticus, Paralabidochromis chilotes



ABOUT THIS RECORD

ID: MNEST008728
species: Oreochromis niloticus
miRNA family: mir-34
source: miRNEST

Taxonomy by NCBI:
Oreochromis niloticus Oreochromis Tilapiini Pseudocrenilabrinae African cichlids Cichlidae Labroidei Perciformes Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGCAGTGTCTTAGCTGGTTG

miRNA*
ATCAGCAAGTATACTGCCGCA

mismatches: 0
bulges: 2

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pre-miRNA
GGGTGTTTCTCTGGCAGTGTCTTAGCTGGTTGTTGTGAGGAGTGAGAACGAAGCAATCAGCAAGTATACTGCCGCAGAAATTCT

dot-bracket secondary structure
.((.((((((.((((((((((((.((((((((((.......((....))..))))))))))))).))))))))).)))))).))


SIMILARITIES
miRBase dre-mir-34: 3e-34

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-34: 7e-39
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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