miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Quercus petraea, Quercus robur



ABOUT THIS RECORD

ID: MNEST002306
species: Quercus petraea
miRNA family: MIRf129
source: miRNEST

Taxonomy by NCBI:
Quercus petraea Quercus Fagaceae Fagales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCCGGTGGGATTCCTTCCTTG

miRNA*
AGGGGTCGACTCCTTCTGGATG

mismatches: 3
bulges: 1

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pre-miRNA
GAGGACAAGATGAGGGGTCGACTCCTTCTGGATGTTATAGTCGGCAAGGGTGCGCCCGTCCTCGAGCTGCTTCCCGGCGAAAATCAACCTCTGCTGGTCC
GGTGGGATTCCTTCCTTG
TCTTGGATC


dot-bracket secondary structure
.....((((((((((((..((.((((.(((((........((((((.((((.((((...................)))).......)))).)))))))))
)).)))).)).)))))))
)))))....



SIMILARITIES
miRBase no hits

PMRD ath-miRf10060-akr: 0.0000000000004

microPC no hits
UniProt sp|Q9FHQ6|UBQ9_ARATH: 2e-16

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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