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Species belonging to selected taxon:
Raphanus raphanistrum
,
Raphanus raphanistrum subsp. landra
,
Raphanus raphanistrum subsp. maritimus
,
Raphanus sativus
,
Raphanus sativus var. oleiformis
ABOUT THIS RECORD
ID:
MNEST002337
species:
Raphanus raphanistrum
miRNA family:
MIRf427
source:
miRNEST
Taxonomy by NCBI:
Raphanus raphanistrum
Raphanus
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GAGAGCAAGAGCAGCTGCTTT
miRNA*
AGCAGTGGCTCTTGTGCTCCC
mismatches:
2
bulges:
0
View larger
pre-miRNA
CGTGATCTAAG
GAGAGCAAGAGCAGCTGCTTT
GAACATTGTTCCCACATCTACAGGAGCAGCCAA
AGCAGTGGCTCTTGTGCTCCC
TAACCTCA
dot-bracket secondary structure
.......((.(
(((.((((((((.((((((((
(....(((((((..........))))))).)))
)))))).)))))))).)))).
))......
SIMILARITIES
miRBase
no hits
PMRD
ath-miRf10919-akr
:
1e-37
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record