miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis



ABOUT THIS RECORD

ID: MNEST002425
species: Raphanus sativus var. oleiformis
miRNA family: MIRf20
source: miRNEST

Taxonomy by NCBI:
Raphanus sativus var. oleiformis Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAAGACTTCGAAGCTGGCTG

miRNA*
 GACCTGTTCTGAAGCTCTATC

mismatches: 4
bulges: 2
View larger
pre-miRNA
 ACGTTTCCGGTTCCATTCCTATGAAGACTTCGAAGCTGGCTGTGATATGAAAGGTGATCTTTTCGGGGACCTGTTCTGAAGCTCTATCTTTGGGACCAAG
CTGCTG

dot-bracket secondary structure
........(((((((.....(((.((.(((((.(((.((((......(((((((....))))))).)).)).))).))))))).)))...)))))))...
......


SIMILARITIES
miRBase cel-mir-2: 0.00008

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




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