miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Caenorhabditis elegans, Ancylostoma caninum, Heterorhabditis bacteriophora, Caenorhabditis japonica, Caenorhabditis brenneri, Strongyloides ratti, Caenorhabditis remanei, Nippostrongylus brasiliensis, Strongyloides stercoralis, Ancylostoma ceylanicum



ABOUT THIS RECORD

ID: MNEST038500
species: Caenorhabditis remanei
miRNA family: mir-36
source: miRBase, original name: crm-mir-35g (MI0011101)

Taxonomy by NCBI:
Caenorhabditis remanei Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCACCGGGTGAACATTGGTACT

miRNA*
TGCTGATGTTGACCTCGGTGATA

mismatches: 4
bulges: 1

View larger
pre-miRNA
ATTGCACTTGACGACGGGAACCGTGCTGATGTTGACCTCGGTGATAGGACTGAACCGTTACAAGCTATCACCGGGTGAACATTGGTACTGGTCCCTTAGT
CATGATATTGCGAT


dot-bracket secondary structure
((((((..((((...((((.((((((..(((((.(((.((((((((((((......))).....)))))))))))).)))))..)))).))))))...))
))......))))))



SIMILARITIES
miRBase crm-mir-35f: 2e-27

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-36: 5e-53

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"




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