miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Caenorhabditis elegans, Heterorhabditis bacteriophora, Caenorhabditis japonica, Caenorhabditis brenneri, Caenorhabditis remanei



ABOUT THIS RECORD

ID: MNEST038491
species: Caenorhabditis remanei
miRNA family: mir-36
source: miRBase, original name: crm-mir-35b (MI0011026)

Taxonomy by NCBI:
Caenorhabditis remanei Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCACCGGGTGAAAATCAAGGC

miRNA*
ACTGGTTTTTGCTTCGGTGATA

mismatches: 5
bulges: 1

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pre-miRNA
TCGGTGGGATCGGACCTACACTGGTTTTTGCTTCGGTGATATTTCAAGAATGATTATCACCGGGTGAAAATCAAGGCAGGTCCGATCTCACCGA

dot-bracket secondary structure
(((((((((((((((((.(..(((((((..((.((((((((..(((....))).))))))))))..)))))))..).)))))))))))))))))


SIMILARITIES
miRBase crm-mir-35c-3: 2e-32

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-36: 4e-28

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"




Liczniki na strone;