miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Caenorhabditis elegans, Heterorhabditis bacteriophora, Caenorhabditis japonica, Caenorhabditis brenneri, Caenorhabditis remanei



ABOUT THIS RECORD

ID: MNEST038550
species: Caenorhabditis remanei
miRNA family: mir-87
source: miRBase, original name: crm-mir-87 (MI0011086)

Taxonomy by NCBI:
Caenorhabditis remanei Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GTGAGCAAAGTTTCAGGTGTGC

miRNA*
CGCCTGACACTTTCGTCTCAACCT

mismatches: 1
bulges: 4

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pre-miRNA
CAGGTTGTGCCTTCCGGCCGCCTGACACTTTCGTCTCAACCTCGCTGTCTGATATAGTCGTAGGTGAGCAAAGTTTCAGGTGTGCCGGAACACATCCT

dot-bracket secondary structure
.(((.((((..((((((((((((((.(((((.(.((((.(((((((((.....)))).)).))))))))))))).))))))).))))))))))).)))


SIMILARITIES
miRBase cel-mir-87: 7e-33

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-87: 4e-47

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"




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