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Species belonging to selected taxon:

Ricinus communis



ABOUT THIS RECORD

ID: MNEST040338
species: Ricinus communis
miRNA family: MIR159
source: miRBase, original name: rco-MIR159 (MI0013378)

Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTGGATTGAAGGGAGCTCTA

miRNA*
GAGCTCCTTGAAGTCCAATAG

mismatches: 3
bulges: 0

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pre-miRNA
GAGTGGAGCTCCTTGAAGTCCAATAGAGGATCTTGATGGGTAGATTGAGCTGCTGAGCTATGGATCCCACAGCCCTATAAGCAGAGATTATAATTTTGGA
TAGGCTTGTGGCTTGCATATCTCAGGAGCTTCATTACCTTGTATTAGATCCTTGTTTGGATTGAAGGGAGCTCTACATCT


dot-bracket secondary structure
..((((((((((((..(((((((..((((((((....((((((...(((((.(((((.((((.(..((((((.(((((...(((((.......))))).)
)))).))))))..).)))).))))).)))))..))))))......))))))))..)))))))..))))))))))))....



SIMILARITIES
miRBase ptc-MIR159b: 5e-32

PMRD ptc-miR159b: 5e-32

microPC miR159: 1e-94
UniProt no hits

RFAM MIR159: 3e-98

Identical with: miR319 from microPC (MNEST044913)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR

references

[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"




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