miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Mus musculus
,
Rattus norvegicus
,
Peromyscus maniculatus bairdii
,
Cavia porcellus
,
Peromyscus polionotus subgriseus
ABOUT THIS RECORD
ID:
MNEST032225
species:
Mus musculus
miRNA family:
mir-615
source:
miRBase, original name:
mmu-mir-615
(
MI0005004
)
Taxonomy by NCBI:
Mus musculus
Mus
Mus
Murinae
Muridae
Muroidea
Sciurognathi
Rodentia
Glires
Euarchontoglires
Eutheria
Theria
Mammalia
Amniota
Tetrapoda
Sarcopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCCGAGCCTGGGTCTCCCTCTT
miRNA*
GGGGGGTCCCCGGTGCTCGGATC
mismatches:
2
bulges:
1
View larger
pre-miRNA
TCGGGAGGGGCGGGA
GGGGGGTCCCCGGTGCTCGGATC
TCGAGGGTGCTTATTGTTCGG
TCCGAGCCTGGGTCTCCCTCTT
CCCCCCATCCC
dot-bracket secondary structure
..((((((((.((((
((((((..(((((.((((((((.
.((((.(.......).)))))
))))))))))))..))))))))
)))))).))))
SIMILARITIES
miRBase
mmu-mir-615
:
3e-47
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-615: 5e-40
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
MPSS, cloned, Solexa
references
[
1
] Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP,
Genes Dev. 24:992-1009(2010).
,
"Mammalian microRNAs: experimental evaluation of novel and previously annotated genes"
[
2
] Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M,
Cell. 129:1401-1414(2007).
,
"A mammalian microRNA expression atlas based on small RNA library sequencing"
[
3
] Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I,
Nucleic Acids Res. 34:1765-1771(2006).
,
"The expression profile of microRNAs in mouse embryos"
[
4
] Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A,
Mol Hum Reprod. 16:463-471(2010).
,
"MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing"