miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Fragaria vesca, Fragaria x ananassa, Humulus lupulus, Prunus armeniaca, Prunus persica



ABOUT THIS RECORD

ID: MNEST045384
species: Fragaria vesca
source: microPC, original name: miR398

Taxonomy by NCBI:
Fragaria vesca Fragaria Potentilleae Rosodae Rosoideae Rosaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GTGTTCTCAGGTCGCCCCT

miRNA*
GAGCGACCTGAGACCACATGT

mismatches: 1
bulges: 2

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pre-miRNA
AGGAGCGACCTGAGACCACATGTGTGCACCCTCACCACACTCCAAAGTGAGAGTACATAACCACGTGTTCTCAGGTCGCCCCT

dot-bracket secondary structure
(((.(((((((((((..(((((((((.((.(((((...........))))).)).))....)))))))))))))))))).)))


SIMILARITIES
miRBase osa-MIR398b: 0.001

PMRD vvi-miR398c: 0.001

microPC miR398: 6e-42
UniProt no hits

RFAM no hits

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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