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Species belonging to selected taxon:
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
ABOUT THIS RECORD
ID:
MNEST002501
species:
Saccharum officinarum
miRNA family:
MIRf10
source:
miRNEST
Taxonomy by NCBI:
Saccharum officinarum
Saccharum officinarum complex
Saccharum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GCTCAAAAGATTCGTCTCGAC
miRNA*
GAGACGAACATTTTGAGTCT
mismatches:
3
bulges:
0
View larger
pre-miRNA
TCCAATCATGGACAAACTAG
GCTCAAAAGATTCGTCTCGAC
ATTTACAGACAAACTGTGCAATTAGTTATTTTTTTACCTACATTTAATACTTCATGCAT
GCGTCTAAAGATTCGATGTGACAGGAAATCTTGTAAAATTTTTGGAAGTTTGAGGGGATCTAAACACTCCCTTCGTCCCCAAATTCCACTGTGCAAAAAG
AAAATTCCCATCACATCAAAATACCGGCACATGCATGGAGTACTAAATGTAGATGAAATTAAAAACTAATTGCACAGTTTTATTGTACTCTGC
GAGACGA
ACATTTTGAGTCT
AATTAGTCAAAGTTTGA
dot-bracket secondary structure
..(((.....(((.((.(((
((((((((..(((((((((.(
(..(((((..(((((((((((((((((.((.(((((.(((((((((.((((((((((((
(.(((.....(((.(((((((..((((.((((.....((...(((((...((((((((.........))))))))........)))))..)).....)))
)...))))..)))))))..)))...))).))))))))))))).))))))))).)))))..)).)))))))))))))))))..)))))...)))
)))))))
)..))))))))))
).)).))).....))).
SIMILARITIES
miRBase
osa-MIR2124a
:
0.00000007
PMRD
osa-miRf11301-akr
:
0.000000001
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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