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Species belonging to selected taxon:
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
ABOUT THIS RECORD
ID:
MNEST054642
species:
Saccharum officinarum
miRNA family:
MIR319
source:
PMRD, original name:
sof-miR319a
Taxonomy by NCBI:
Saccharum officinarum
Saccharum officinarum complex
Saccharum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGGACTGAAGGGTGCTCCC
miRNA*
GTGCTCCCTCCTCCCGGCCTCCTTTGTTTACTTTACCCATGCGCAGCTTCATCATATCTCAGGG
mismatches:
7
bulges:
509
View larger
pre-miRNA
TTGGACTGAAGG
GTGCTCCC
TCCTCCCGGCCTCCTTTGTTTACTTTACCCATGCGCAGCTTCATCATATCTCAGGG
TTTTACTTCATGATCTGTATTTAT
TTTCCAACCTGCTGTCTTGAACTCTTGATCTGTCTTTGCTTGAGCTGCTTAATTATTATCTTATATATTTCTTTGGCATCTGCTGCATATATATGCAGCA
GCTGCCAAACTACGGGCCTATTTTAATTTTATCATGTGCGTGCTTACTGTTCTTCTCTGGCTGTTATGTAGCAGTTGTATATATAATCGAGATCCAAAGC
TTTTTGTACTTTCCTTGCCCTTTTTTGATATATATACTAGCTATAAATCCTTGATCTGCTAGCTGAATCTATATATTGTTCTCTTCCAAAAAGAGATCCC
ATAGTTTCAATTTGCTTTACTTGTGTGTAGATCTTACAGGACATGATCGGATCCATACATCGATGCATCGTCTCTGCAGGTTTCTGCTGTGTATTTCTGT
GATCTGTGGAAGAAGGTGGTGTGCACTGTTGTGGTCTAG
dot-bracket secondary structure
.((((((..(((
(....)))
)......(((((......................(((((((...((.....((((.
......((((.(((..(((.....
.........))).))).)))).......))))....))...))))))).......................(((((((.(((((((((....))))))))
).)))))))....))))).................(((((..((.(((.(((((((..........((((((....(((((((((.((((((......((
................))....)))))))))))))))..))))))..((((.(((((((.(((((((.((((.......((((((.....))))))....
)))).))))....)))..........)))))))....))))......((((((...(((..(((((((.......((((....)))).)))))))..)))
)))))).))))))))))))..)))))......)))))).
SIMILARITIES
miRBase
sbi-MIR319
:
0.00000000003
PMRD
sbi-miR319
:
0.00000000003
microPC
no hits
UniProt
no hits
RFAM
MIR159: 0.000002
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
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